PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019039m
Common NameCICLE_v10019039mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 728aa    MW: 80766.4 Da    PI: 6.62
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019039mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-20582680295
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                      +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++    ++ks++y+l+ ++ +FvkangL+egDf+v++  ++ 
  Ciclev10019039m 582 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYSFrfwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIY--SDv 672
                      79*************************999999********7778*******9999988888888888.********************..555 PP

                      SEE..EEE CS
               B3  88 sefelvvk 95 
                      ++++++++
  Ciclev10019039m 673 KCGKYLIR 680
                      99988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-27576690IPR015300DNA-binding pseudobarrel domain
CDDcd100156.56E-36579682No hitNo description
SuperFamilySSF1019361.51E-21580676IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.503581685IPR003340B3 DNA binding domain
SMARTSM010192.5E-16581685IPR003340B3 DNA binding domain
PfamPF023622.1E-16582679IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MKNLQLYGED LHVRSKIEAN NHTGFQAMTE EQVTGAGAER EIYMQDDLLD VDDASIFYAD  60
FPPLPDFPCM SSSSSSSSTP AAVKAITSSA SSSSASSSSS AASWAVLRSD AEEDVDKKNH  120
QDQSGDAATQ PALSSTASMD ISQATDTGIN GVGVDCMDVM ENFVFMDLLD NNDLFDPSSI  180
FNQDDSQPFE GYQQQQQQNQ PQHEHRQQER DQELMMQSNN GDNSNEDGGA SDDLAMVFLE  240
WLKSNKETVS AEDLRNVKIK KSTIECAAKR LGGGKEAMKQ LLKLILEWVQ TNHLQKRRMR  300
EALLPASNNN NNLPHQQHFQ DTFQNPNPNP NPNHIPNPNL NCNPIPPEPN PCFAQSSWIG  360
QPSFIHDPAT MVTGFPTPAV GYMGDSFANG MSNINGHGYA APPSEYHMLE TTRSWPNSQF  420
GLASNYNSFS DNNLHPAPLH PQAFTGYGNQ YPYPYLPGHG EQRLMRMGSS ATKEARKKRM  480
ARQRRLSTHP RHQHHHNNQQ NQLQGQNADQ HARFGSDNCN PAAQANSGNW VFWPASAGGP  540
AAVSPLSPVD RQPMQPQNYQ RQPASDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK  600
KEAETHLPEL EARDGISIAM EDIGTSRVWN MRYSFRFWPN NKSRMYLLEN TGDFVKANGL  660
QEGDFIVIYS DVKCGKYLIR GVKVRQPGPK SETKRTGKSQ RNQHANPPSA AMGNGSSSSL  720
QVPQTVK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443663.10.0hypothetical protein CICLE_v10019039mg
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLV4T9C60.0V4T9C6_9R
STRINGPOPTR_0002s25330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-153B3 family protein